iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q92636|FAN_HUMAN Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2

{"length":"917","regions":[{
startStyle: "straight", endStyle: "straight",
start: 23, end: 28, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 23, end: 28}
},
{
startStyle: "curved", endStyle: "curved",
start: 176, end: 247, text: "GRAM", colour: "#ff8800",
"metadata":{ database: "SMART", type: "GRAM",
description: "GRAM", start: 176, end: 247}
},
{
startStyle: "curved", endStyle: "curved",
start: 302, end: 575, text: "Beach", colour: "#ff8800",
"metadata":{ database: "SMART", type: "Beach",
description: "Beach", start: 302, end: 575}
},
{
startStyle: "curved", endStyle: "curved",
start: 619, end: 658, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 619, end: 658}
},
{
startStyle: "curved", endStyle: "curved",
start: 661, end: 700, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 661, end: 700}
},
{
startStyle: "curved", endStyle: "curved",
start: 703, end: 740, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 703, end: 740}
},
{
startStyle: "curved", endStyle: "curved",
start: 753, end: 791, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 753, end: 791}
},
{
startStyle: "curved", endStyle: "curved",
start: 794, end: 833, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 794, end: 833}
},
{
startStyle: "curved", endStyle: "curved",
start: 836, end: 872, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 836, end: 872}
},
{
startStyle: "curved", endStyle: "curved",
start: 875, end: 914, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 875, end: 914}
},
{
startStyle: "straight", endStyle: "straight",
start: 600, end: 605, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:ESFEDL", start: 600, end: 605}
},
{
startStyle: "straight", endStyle: "straight",
start: 869, end: 874, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:LVWDLL", start: 869, end: 874}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	600	605	ESFEDL	12 (1.1e-01)		[+/-] 3IZ6_a 3RFH_A,B,C,D 3IZ6_a 3RFH_A,B,C,D 3RFG_A,B 4BYT_6 4BYL_6 3U5G_g 3U5C_g 3O30_T 3O2Z_T 3IZB_a 3FRX_A,B,C,D 3JYV_R 1TRJ_A 2YMU_A,B 2YMU_A,B 2YMU_A,B	No
xLIR	869	874	LVWDLL	13 (7.9e-02)		[+/-] 2CO0_A 2OVP_B 2CO0_A 2OVP_B 2OVP_B 3DM0_A 3DM0_A 1P22_A 1P22_A 1P22_A 3IZ6_a 2CO0_A 3IZ6_a 4AOW_A,B,C 4AOW_A,B,C 1VYH_C,D,G,H,K,L,O,P,S,T 1VYH_C,D,G,H,K,L,O,P,S,T 3SHF_A 3SHF_A 2G9A_A 3SFZ_A 3SFZ_A 4KZZ_g 4KZZ_g 4KZY_g 4KZY_g 4KZX_g 4KZX_g 3J3A_g 3J3A_g 2G9A_A 2ZKQ_a 2ZKQ_a 3OW8_A,B,C,D 3OW8_A,B,C,D 3ZEY_7 3ZEY_7 3RFH_A,B,C,D 3RFH_A,B,C,D 3RFG_A,B 3RFG_A,B 3P4F_A 4BYT_6 4BYT_6 4BYL_6 4BYL_6 3U5G_g 3U5G_g 3U5C_g 3U5C_g 3O30_T 3O30_T 3P4F_A 3O2Z_T 3O2Z_T 3IZB_a 3IZB_a 3FRX_A,B,C,D 3FRX_A,B,C,D 3JYV_R 3JYV_R 4LG8_A 4LG8_A 2H14_A 1TRJ_A 1TRJ_A 4BH6_A,B,C,D,E,F,G,H 1ERJ_A,B,C 1ERJ_A,B,C 1ERJ_A,B,C 3J38_g 4BPP_R 4BPO_R 4BPN_R 2H14_A 4BPE_R 2XZN_R 2XZM_R 2TRC_B 2TRC_B 1GOT_B 1GOT_B 1B9Y_A 1B9Y_A 1B9X_A 2H13_A 1B9X_A 1A0R_B 1A0R_B 4MK0_B 4MK0_B 2BCJ_B 2BCJ_B 3SN6_B 3SN6_B 4KFM_B 2H13_A 4KFM_B 3V5W_B 3V5W_B 3UZS_B 3UZS_B 3PVW_B 3PVW_B 3PVU_B 3PVU_B 3PSC_B 3N0D_A 3UVO_A 3PSC_B 3KRX_B 3KRX_B 3KRW_B 3KRW_B 3CIK_B 3CIK_B 3AH8_B 3AH8_B 1XHM_A 3UVO_A 1XHM_A 1TBG_A,B,C,D 1TBG_A,B,C,D 1OMW_B 1OMW_B 1GP2_B 1GP2_B 1GG2_B 1GG2_B 2CE9_A,B,C,D 3UVN_A,C 2CE8_A,B,C,D 1GXR_A,B 3V7D_B,D 3MKS_B,D 1NEX_B,D 4GGC_A 4GGD_A,B 4GGA_A 3J2T_A,B,C,D,E,F,G 3UVN_A,C 2YNP_A 3MKQ_A,C,E 2YNO_A,B 2YNN_A 2PBI_B,D 2PBI_B,D 4J79_A 4J86_A,B 4J84_A,B 3UVM_A 4J82_A,B 4J81_A,B 4J78_A 4J77_A,B 4J73_A 4J8G_A,B 4J8B_A 4J87_A 3UVM_A 3UVL_A 3UVL_A 3UVK_A 3UVK_A 3N0D_A 3PSL_A,B 3PSL_A,B 2G99_A,B 2G99_A,B 4A7J_A 4A7J_A 3EMH_A 3EMH_A 4IA9_A 4IA9_A 3UR4_A,B 3UR4_A,B 3SMR_A,B,C,D 3SMR_A,B,C,D 4EWR_A 4EWR_A 4ESG_A,B 4ESG_A,B 4ES0_A 4ES0_A 3N0E_A 4ERZ_A,B,C 4ERZ_A,B,C 4ERY_A 4ERY_A 4ERQ_A,B,C 4ERQ_A,B,C 3EG6_A 3EG6_A 2H6Q_A,B 2H6Q_A,B 3N0E_A 2H6N_A,B 2H6N_A,B 2H6K_A,B 2H6K_A,B 2H68_A,B 2H68_A,B 4GM8_A,B,C,D 4GM8_A,B,C,D 4GM3_A,B,C,D,E,F,G,H 4GM3_A,B,C,D,E,F,G,H 2O9K_A,C 2O9K_A,C 2H9P_A 2H9P_A 2H9N_A,C 2H9N_A,C 2H9M_A,C 2H9M_A,C 2H9L_A 2H9L_A 3MXX_A 2CO0_C 2CO0_C 2CNX_A 2CNX_A 2GNQ_A 2GNQ_A 2XL3_A,B 2XL3_A,B 2XL2_A,B 2XL2_A,B 3MXX_A 2YMU_A,B 2YMU_A,B 2OVR_B 2OVR_B 2OVQ_B 2OVQ_B	No

No ANCHORs detected ...

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DOMAIN	START	END	E-VALUE	TYPE	STATUS
low_complexity_region	23	28	0	INTRINSIC	visible\|OK
SMART:GRAM	176	247	7.7e-11	SMART	visible\|OK
Pfam:GRAM	176	247	1.2e-13	PFAM	hidden\|overlap
SMART:Beach	302	575	2.1e-192	SMART	visible\|OK
Pfam:Beach	302	575	2.1e-104	PFAM	hidden\|overlap
SMART:WD40	619	658	0.0104506748603999	SMART	visible\|OK
Pfam:WD40	621	658	0.0035	PFAM	hidden\|overlap
SMART:WD40	661	700	6.62876690500868	SMART	visible\|OK
SMART:WD40	703	740	3.4e-06	SMART	visible\|OK
Pfam:WD40	704	740	6.4e-10	PFAM	hidden\|overlap
SMART:WD40	753	791	0.0147794858017347	SMART	visible\|OK
Pfam:WD40	758	791	0.012	PFAM	hidden\|overlap
SMART:WD40	794	833	1.4e-05	SMART	visible\|OK
Pfam:WD40	795	833	7.3e-05	PFAM	hidden\|overlap
SMART:WD40	836	872	7.13052278807585	SMART	visible\|OK
SMART:WD40	875	914	0.00212214651521329	SMART	visible\|OK
Pfam:WD40	877	914	6.9e-06	PFAM	hidden\|overlap